infinityFlow

This is the development version of infinityFlow; for the stable release version, see infinityFlow.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12

Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions

Bioconductor version: Development (3.24)

Pipeline to analyze and merge data files produced by BioLegend's LEGENDScreen or BD Human Cell Surface Marker Screening Panel (BD Lyoplates).

Author: Etienne Becht [cre, aut]

Maintainer: Etienne Becht <etienne.becht at protonmail.com>

Citation (from within R, enter citation("infinityFlow")):

Etienne Becht. infinityFlow: Augmenting Massively Parallel Cytometry Experiments Using Multivariate Non-Linear Regressions. doi:10.18129/B9.bioc.infinityFlow, R package version 1.23.0, https://bioconductor.org/packages/infinityFlow.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("infinityFlow")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("infinityFlow")

Basic usage of the infinityFlow package	HTML	R Script
Training non default regression models	HTML	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, FlowCytometry, Proteomics, SingleCell, Software
Version	1.23.0
In Bioconductor since	BioC 3.12 (R-4.0) (6 years)
License	GPL-3
Depends	R (>= 4.0.0), flowCore
Imports	stats, grDevices, utils, graphics, pbapply, matlab, png, raster, grid, uwot, gtools, Biobase, generics, parallel, methods, xgboost (>= 3.0.0)
System Requirements
URL

Suggests	knitr, rmarkdown, keras, tensorflow, glmnetUtils, e1071
Linking To
Enhances
Depends On Me
Imports Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	infinityFlow_1.23.0.tar.gz
Windows Binary (x86_64)	infinityFlow_1.23.0.zip
macOS Binary (big-sur-x86_64)	infinityFlow_1.23.0.tgz
macOS Binary (sonoma-arm64)	infinityFlow_1.23.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/infinityFlow
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/infinityFlow
Package Short Url	https://bioconductor.org/packages/infinityFlow/
Package Downloads Report	Download Stats