immunoClust

This is the development version of immunoClust; for the stable release version, see immunoClust.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

immunoClust - Automated Pipeline for Population Detection in Flow Cytometry

Bioconductor version: Development (3.24)

immunoClust is a model based clustering approach for Flow Cytometry samples. The cell-events of single Flow Cytometry samples are modelled by a mixture of multinominal normal- or t-distributions. The cell-event clusters of several samples are modelled by a mixture of multinominal normal-distributions aiming stable co-clusters across these samples.

Author: Till Soerensen [aut, cre]

Maintainer: Till Soerensen <till.soerensen at bioretis.com>

Citation (from within R, enter citation("immunoClust")):

Till Soerensen. immunoClust: immunoClust - Automated Pipeline for Population Detection in Flow Cytometry. doi:10.18129/B9.bioc.immunoClust, R package version 1.45.1, https://bioconductor.org/packages/immunoClust.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("immunoClust")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("immunoClust")

immunoClust package	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, Clustering, FlowCytometry, ImmunoOncology, SingleCell, Software
Version	1.45.1
In Bioconductor since	BioC 3.1 (R-3.2) (11.5 years)
License	Artistic-2.0
Depends	R (>= 4.2), flowCore
Imports	methods, stats, graphics, grid, lattice, grDevices
System Requirements
URL

Suggests	BiocStyle, utils, testthat
Linking To
Enhances
Depends On Me
Imports Me
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Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	immunoClust_1.45.1.tar.gz
Windows Binary (x86_64)	immunoClust_1.45.1.zip
macOS Binary (big-sur-x86_64)	immunoClust_1.45.1.tgz
macOS Binary (sonoma-arm64)	immunoClust_1.45.1.tgz
Source Repository	git clone https://git.bioconductor.org/packages/immunoClust
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/immunoClust
Package Short Url	https://bioconductor.org/packages/immunoClust/
Package Downloads Report	Download Stats