imageFeatureTCGA
This is the development version of imageFeatureTCGA; for the stable release version, see imageFeatureTCGA.
All Bioconductor versions of imageFeatureTCGA
3.24 (devel), 3.23 (release)
Import features from hovernet, provgigapath into a MultiAssayExperiment
Bioconductor version: 3.24 · Package version: 1.1.6
The package imports data from HoverNet, and ProvGigaPath pipelines. Pipeline output data are hosted in a self-owned online repository. Package functionality conveniently incorporates pipeline data into existing MultiAssayExperiment instances from curatedTCGAData.
Author: Marcel Ramos [aut] (ORCID: 
, affiliation: CUNY Graduate School of Public Health and Health Policy, New York, NY USA), Ilaria Billato [aut, cre] (ORCID: , affiliation: Department of Biology, University of Padova), Eslam Abousamra [aut] (affiliation: CUNY Graduate School of Public Health and Health Policy, New York, NY USA), Sehyun Oh [aut] (ORCID: , affiliation: CUNY Graduate School of Public Health and Health Policy, New York, NY USA)
Maintainer: Ilaria Billato <ilaria.billato at phd.unipd.it>
Citation
From within R, enter citation("imageFeatureTCGA"):
Marcel Ramos, Ilaria Billato, Eslam Abousamra, Sehyun Oh. imageFeatureTCGA: Import features from hovernet, provgigapath into a MultiAssayExperiment. doi:10.18129/B9.bioc.imageFeatureTCGA, R package version 1.1.6, https://bioconductor.org/packages/imageFeatureTCGA.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("imageFeatureTCGA")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.1.6 |
| License | Artistic-2.0 |
| URL | https://github.com/waldronlab/imageFeatureTCGA |
| Bug Reports | https://github.com/waldronlab/imageFeatureTCGA/issues |
| Last updated | 2026-07-13 |
| In Bioconductor since | BioC 3.23 (R-4.6) (less than a year) |
| Downloads rank | 2348 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/imageFeatureTCGA/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("imageFeatureTCGA")| Import HoverNet and ProvGigaPath features with imageFeatureTCGA | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | imageFeatureTCGA_1.1.6.tar.gz |
| Windows binary (x86_64) | imageFeatureTCGA_1.1.6.zip |
| macOS binary (arm64) | imageFeatureTCGA_1.1.6.tgz |
| macOS binary (x86_64) | imageFeatureTCGA_1.1.6.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/imageFeatureTCGA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/imageFeatureTCGA |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: BiocBaseUtils, BiocFileCache, BiocIO, BumpyMatrix, dplyr, httr2, IRanges, methods, readr, rjsoncons, S4Vectors, SingleCellExperiment, SpatialExperiment, SummarizedExperiment, TCGAutils, TENxIO, tibble, utils
Suggests: AnnotationDbi, anndataR, arrow, BiocStyle, BiocParallel, cowplot, curatedTCGAData, curl, ggplot2, imageTCGAutils, knitr, png, RColorBrewer, rhdf5, rmarkdown, SpatialFeatureExperiment, tinytest, yaml