iCheck

This is the development version of iCheck; for the stable release version, see iCheck.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2

QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data

Bioconductor version: Development (3.24)

QC pipeline and data analysis tools for high-dimensional Illumina mRNA expression data.

Author: Weiliang Qiu [aut, cre], Brandon Guo [aut, ctb], Christopher Anderson [aut, ctb], Barbara Klanderman [aut, ctb], Vincent Carey [aut, ctb], Benjamin Raby [aut, ctb]

Maintainer: Weiliang Qiu <stwxq at channing.harvard.edu>

Citation (from within R, enter citation("iCheck")):

Weiliang Qiu, Brandon Guo, Christopher Anderson, Barbara Klanderman, Vincent Carey, Benjamin Raby. iCheck: QC Pipeline and Data Analysis Tools for High-Dimensional Illumina mRNA Expression Data. doi:10.18129/B9.bioc.iCheck, R package version 1.43.0, https://bioconductor.org/packages/iCheck.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("iCheck")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("iCheck")

iCheck	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, DifferentialExpression, GeneExpression, Microarray, OneChannel, Preprocessing, QualityControl, Software, TwoChannel
Version	1.43.0
In Bioconductor since	BioC 3.2 (R-3.2) (11 years)
License	GPL (>= 2)
Depends	R (>= 3.2.0), Biobase, lumi, gplots
Imports	stats, graphics, preprocessCore, grDevices, randomForest, affy, limma, parallel, GeneSelectMMD, rgl, MASS, lmtest, scatterplot3d, utils
System Requirements
URL

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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	iCheck_1.43.0.tar.gz
Windows Binary (x86_64)	iCheck_1.43.0.zip
macOS Binary (big-sur-x86_64)	iCheck_1.43.0.tgz
macOS Binary (sonoma-arm64)	iCheck_1.43.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/iCheck
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/iCheck
Package Short Url	https://bioconductor.org/packages/iCheck/
Package Downloads Report	Download Stats