h5mread
A fast HDF5 reader
Bioconductor version: 3.24 · Package version: 1.5.3
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
The main function in the h5mread package is h5mread(), which allows reading arbitrary data from an HDF5 dataset into R, similarly to what the h5read() function from the rhdf5 package does. In the case of h5mread(), the implementation has been optimized to make it as fast and memory-efficient as possible.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("h5mread")Details
| Maintainer | Hervé Pagès <hpages.on.github@gmail.com> |
| Author | Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>) |
| License | Artistic-2.0 |
| URL | https://bioconductor.org/packages/h5mread |
| Bug Reports | https://github.com/Bioconductor/h5mread/issues |
| System Requirements | GNU make |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Infrastructure, Software |
| Package Short Url | https://bioconductor.org/packages/h5mread/ |
Citation
From within R, enter citation("h5mread"):
Hervé Pagès. h5mread: A fast HDF5 reader. doi:10.18129/B9.bioc.h5mread, R package version 1.5.3, https://bioconductor.org/packages/h5mread.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | h5mread_1.5.3.tar.gz |
| Windows binary (x86_64) | h5mread_1.5.3.zip |
| macOS binary (arm64) | h5mread_1.5.3.tgz |
| macOS binary (x86_64) | h5mread_1.5.3.tgz |
Dependencies
Depends: R (>= 4.5), methods, rhdf5 (>= 2.57.12), BiocGenerics, SparseArray
Imports: stats, tools, rhdf5filters, S4Vectors (>= 0.51.7), IRanges, S4Arrays
LinkingTo: Rhdf5lib, S4Vectors
Suggests: BiocParallel, ExperimentHub, TENxBrainData, HDF5Array, testthat, knitr, rmarkdown, BiocStyle
Reverse dependencies
Depends On Me (1): HDF5Array
Imports Me (1): SpliceWiz
Suggests Me (1): MultiAssayExperiment