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grayleafspotr

This is the development version of grayleafspotr; to use it, please install the devel version of Bioconductor.

Quantitative Analysis of Gray Leaf Spot Colonies from Plate Images

DOI: 10.18129/B9.bioc.grayleafspotr

Bioconductor version: Development (3.24)

Quantitative phenotyping of gray leaf spot (Magnaporthe oryzae) fungal colonies grown on petri dishes. The package segments colonies from time-lapse plate photographs using a bundled SmallUNet deep-learning model, extracts morphometric and texture features (area, eccentricity, crack coverage, radial profile), and provides tidy result objects together with template ggplot2 visualisations. Python dependencies are managed automatically through basilisk; no manual environment setup is required.

Author: Rohan R [aut, cre, cph] ORCID: 0009-0005-9225-1775

Maintainer: Rohan R <phonics-tiffs1i at icloud.com>

Citation (from within R, enter citation("grayleafspotr")):

Rohan R. grayleafspotr: Quantitative Analysis of Gray Leaf Spot Colonies from Plate Images. doi:10.18129/B9.bioc.grayleafspotr, R package version 0.99.14, https://bioconductor.org/packages/grayleafspotr.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("grayleafspotr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("grayleafspotr")

Details

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