glycoTraitR
This is the development version of glycoTraitR; for the stable release version, see glycoTraitR.
All Bioconductor versions of glycoTraitR
3.24 (devel), 3.23 (release)
Compute and analyze the glycan structrual traits from GPSM data
Bioconductor version: 3.24 · Package version: 1.1.0
GlycoTraitR is an R package for analyzing glycoproteomics data, particularly glycopeptide-spectrum matches (GPSMs). It supports results generated by the pGlyco3 and Glyco-Decipher search engines. The package parses glycan structures, computes monosaccharide compositions and structural traits, and performs differential analysis of glycan heterogeneity. It constructs trait-by-PSM matrices stored in a SummarizedExperiment object, supports user-defined structural motifs, and provides visualization utilities for interpreting glycan trait changes.
Author: Bingyuan Zhang [aut, cre] 
, Koichi Himori [aut], Yusuke Matsui [aut, fnd]
Maintainer: Bingyuan Zhang <zhang.bingyuan.w8 at f.mail.nagoya-u.ac.jp>
Citation
From within R, enter citation("glycoTraitR"):
Bingyuan Zhang, Koichi Himori, Yusuke Matsui. glycoTraitR: Compute and analyze the glycan structrual traits from GPSM data. doi:10.18129/B9.bioc.glycoTraitR, R package version 1.1.0, https://bioconductor.org/packages/glycoTraitR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("glycoTraitR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.1.0 |
| License | MIT + file LICENSE |
| URL | https://github.com/matsui-lab/glycoTraitR |
| Bug Reports | https://github.com/matsui-lab/glycoTraitR/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.23 (R-4.6) (less than a year) |
| Downloads rank | 2320 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MassSpectrometry, Proteomics, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/glycoTraitR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("glycoTraitR")| glycoTraitR Quick Start | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | glycoTraitR_1.1.0.tar.gz |
| Windows binary (x86_64) | glycoTraitR_1.1.0.zip |
| macOS binary (arm64) | glycoTraitR_1.1.0.tgz |
| macOS binary (x86_64) | glycoTraitR_1.1.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/glycoTraitR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/glycoTraitR |
| Package Downloads Report | Download Stats |