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gVenn

This is the development version of gVenn; for the stable release version, see gVenn.

All versions

3.24 (devel), 3.23 (release), 3.22

Proportional Venn and UpSet Diagrams for Gene Sets and Genomic Regions

DOI: 10.18129/B9.bioc.gVenn

Bioconductor version: Development (3.24)

Tools to compute and visualize overlaps between gene sets or genomic regions. Venn diagrams with proportional areas are provided, while UpSet plots are recommended for larger numbers of sets. The package supports GRanges and GRangesList inputs, and integrates with analysis workflows for ChIP-seq, ATAC-seq, and other genomic interval data. It generates clean, interpretable, and publication-ready figures.

Author: Christophe Tav [aut, cre] ORCID: 0000-0001-8808-9617

Maintainer: Christophe Tav <christophe.tav at gmail.com>

Citation (from within R, enter citation("gVenn")):

Christophe Tav. gVenn: Proportional Venn and UpSet Diagrams for Gene Sets and Genomic Regions. doi:10.18129/B9.bioc.gVenn, R package version 1.99.0, https://bioconductor.org/packages/gVenn.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("gVenn")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gVenn")

Details

Package Archives

Follow Installation instructions to use this package in your R session.