funtooNorm

This is the development version of funtooNorm; for the stable release version, see funtooNorm.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5

Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit

Bioconductor version: Development (3.24)

Provides a function to normalize Illumina Infinium Human Methylation 450 BeadChip (Illumina 450K), correcting for tissue and/or cell type.

Author: Celia Greenwood <celia.greenwood at mcgill.ca>,Stepan Grinek <stepan.grinek at ladydavis.ca>, Maxime Turgeon <maxime.turgeon at mail.mcgill.ca>, Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Maintainer: Kathleen Klein <kathleen.klein at mail.mcgill.ca>

Citation (from within R, enter citation("funtooNorm")):

Celia Greenwood, Stepan Grinek, Maxime Turgeon, Kathleen Klein. funtooNorm: Normalization Procedure for Infinium HumanMethylation450 BeadChip Kit. doi:10.18129/B9.bioc.funtooNorm, R package version 1.37.0, https://bioconductor.org/packages/funtooNorm.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("funtooNorm")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DNAMethylation, Normalization, Preprocessing, Software
Version	1.37.0
In Bioconductor since	BioC 3.5 (R-3.4) (9.5 years)
License	GPL-3
Depends	R (>= 3.4)
Imports	pls, matrixStats, minfi, methods, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, GenomeInfoDb, grDevices, graphics, stats
System Requirements
URL

Suggests	prettydoc, minfiData, knitr, rmarkdown
Linking To
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Depends On Me
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Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	funtooNorm_1.37.0.tar.gz
Windows Binary (x86_64)	funtooNorm_1.37.0.zip
macOS Binary (big-sur-x86_64)	funtooNorm_1.37.0.tgz
macOS Binary (sonoma-arm64)	funtooNorm_1.37.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/funtooNorm
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/funtooNorm
Package Short Url	https://bioconductor.org/packages/funtooNorm/
Package Downloads Report	Download Stats