flowSpecs
Tools for processing of high-dimensional cytometry data
Bioconductor version: 3.24 · Package version: 1.27.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package is intended to fill the role of conventional cytometry pre-processing software, for spectral decomposition, transformation, visualization and cleanup, and to aid further downstream analyses, such as with DepecheR, by enabling transformation of flowFrames and flowSets to dataframes. Functions for flowCore-compliant automatic 1D-gating/filtering are in the pipe line. The package name has been chosen both as it will deal with spectral cytometry and as it will hopefully give the user a nice pair of spectacles through which to view their data.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("flowSpecs")Details
| Maintainer | Jakob Theorell <jakob.theorell@ki.se> |
| Author | Jakob Theorell [aut, cre] |
| License | MIT + file LICENSE |
| Bug Reports | https://github.com/jtheorell/flowSpecs/issues |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | CellBasedAssays, DataImport, DataRepresentation, FlowCytometry, ImmunoOncology, Normalization, SingleCell, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/flowSpecs/ |
Citation
From within R, enter citation("flowSpecs"):
Jakob Theorell. flowSpecs: Tools for processing of high-dimensional cytometry data. doi:10.18129/B9.bioc.flowSpecs, R package version 1.27.0, https://bioconductor.org/packages/flowSpecs.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | flowSpecs_1.27.0.tar.gz |
| Windows binary (x86_64) | flowSpecs_1.27.0.zip |
| macOS binary (arm64) | flowSpecs_1.27.0.tgz |
| macOS binary (x86_64) | flowSpecs_1.27.0.tgz |
Dependencies
Depends: R (>= 4.3)
Imports: ggplot2 (>= 3.1.0), BiocGenerics (>= 0.30.0), BiocParallel (>= 1.18.1), Biobase (>= 2.48.0), reshape2 (>= 1.4.3), flowCore (>= 1.50.0), zoo (>= 1.8.6), stats (>= 3.6.0), methods (>= 3.6.0)