flowDensity

This is the development version of flowDensity; for the stable release version, see flowDensity.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0

Sequential Flow Cytometry Data Gating

Bioconductor version: Development (3.24)

This package provides tools for automated sequential gating analogous to the manual gating strategy based on the density of the data.

Author: Mehrnoush Malek,M. Jafar Taghiyar

Maintainer: Mehrnoush Malek <mehrmalek at gmail.com>

Citation (from within R, enter citation("flowDensity")):

Mehrnoush Malek, M. Jafar Taghiyar. flowDensity: Sequential Flow Cytometry Data Gating. doi:10.18129/B9.bioc.flowDensity, R package version 1.47.0, https://bioconductor.org/packages/flowDensity.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("flowDensity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

No vignettes available
Reference Manual	PDF
README	Text
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Bioinformatics, Cancer, CellBiology, Clustering, DataRepresentation, DensityGating, FlowCytData, FlowCytometry, Software, StemCell
Version	1.47.0
In Bioconductor since	BioC 3.0 (R-3.1) (12 years)
License	Artistic-2.0
Depends
Imports	flowCore, graphics, flowViz (>= 1.42), car, polyclip, gplots, methods, stats, grDevices
System Requirements	xml2, GNU make, C++11
URL

Suggests	knitr, rmarkdown
Linking To
Enhances
Depends On Me
Imports Me	CompensAID, cyanoFilter, ddPCRclust, flowCut
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowDensity_1.47.0.tar.gz
Windows Binary (x86_64)	flowDensity_1.47.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	flowDensity_1.47.0.tgz
macOS Binary (sonoma-arm64)	flowDensity_1.47.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowDensity
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowDensity
Package Short Url	https://bioconductor.org/packages/flowDensity/
Package Downloads Report	Download Stats