flagme

This is the development version of flagme; for the stable release version, see flagme.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Analysis of Metabolomics GC/MS Data

Bioconductor version: Development (3.24)

Fragment-level analysis of gas chromatography-massspectrometry metabolomics data.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Citation (from within R, enter citation("flagme")):

Mark Robinson, Riccardo Romoli. flagme: Analysis of Metabolomics GC/MS Data. doi:10.18129/B9.bioc.flagme, R package version 1.69.0, https://bioconductor.org/packages/flagme.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")

Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data	PDF	R Script
\texttt{flagme}: Fragment-level analysis of \\ GC-MS-based metabolomics data	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DifferentialExpression, MassSpectrometry, Software
Version	1.69.0
In Bioconductor since	BioC 2.4 (R-2.9) (17.5 years)
License	LGPL (>= 2)
Depends	gcspikelite, xcms, CAMERA
Imports	gplots, graphics, MASS, methods, SparseM, stats, utils
System Requirements
URL

Suggests
Linking To
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Depends On Me
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Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flagme_1.69.0.tar.gz
Windows Binary (x86_64)	flagme_1.69.0.zip
macOS Binary (big-sur-x86_64)	flagme_1.69.0.tgz
macOS Binary (sonoma-arm64)	flagme_1.69.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flagme
Package Short Url	https://bioconductor.org/packages/flagme/
Package Downloads Report	Download Stats