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evaluomeR

This is the development version of evaluomeR; for the stable release version, see evaluomeR.

Evaluation of Bioinformatics Metrics


Bioconductor version: Development (3.19)

Evaluating the reliability of your own metrics and the measurements done on your own datasets by analysing the stability and goodness of the classifications of such metrics.

Author: José Antonio Bernabé-Díaz [aut, cre], Manuel Franco [aut], Juana-María Vivo [aut], Manuel Quesada-Martínez [aut], Astrid Duque-Ramos [aut], Jesualdo Tomás Fernández-Breis [aut]

Maintainer: José Antonio Bernabé-Díaz <joseantonio.bernabe1 at um.es>

Citation (from within R, enter citation("evaluomeR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("evaluomeR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("evaluomeR")
Evaluation of Bioinformatics Metrics with evaluomeR HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews Classification, Clustering, FeatureExtraction, Software
Version 1.19.0
In Bioconductor since BioC 3.9 (R-3.6) (5 years)
License GPL-3
Depends R (>= 3.6), SummarizedExperiment, MultiAssayExperiment, cluster (>= 2.0.9), fpc (>= 2.2-3), randomForest (>= 4.6.14), flexmix (>= 2.3.15)
Imports corrplot (>= 0.84), grDevices, graphics, reshape2, ggplot2, ggdendro, plotrix, stats, matrixStats, Rdpack, MASS, class, prabclus, mclust, kableExtra
System Requirements
URL https://github.com/neobernad/evaluomeR
Bug Reports https://github.com/neobernad/evaluomeR/issues
See More
Suggests BiocStyle, knitr, rmarkdown, magrittr
Linking To
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Depends On Me
Imports Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package evaluomeR_1.19.0.tar.gz
Windows Binary evaluomeR_1.19.0.zip
macOS Binary (x86_64) evaluomeR_1.19.0.tgz
macOS Binary (arm64) evaluomeR_1.19.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/evaluomeR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/evaluomeR
Bioc Package Browser https://code.bioconductor.org/browse/evaluomeR/
Package Short Url https://bioconductor.org/packages/evaluomeR/
Package Downloads Report Download Stats