epivizrStandalone
Run Epiviz Interactive Genomic Data Visualization App within R
Bioconductor version: 3.24 · Package version: 1.41.0
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
This package imports the epiviz visualization JavaScript app for genomic data interactive visualization. The 'epivizrServer' package is used to provide a web server running completely within R. This standalone version allows to browse arbitrary genomes through genome annotations provided by Bioconductor packages.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("epivizrStandalone")Details
| Maintainer | Hector Corrada Bravo <hcorrada@gmail.com> |
| Author | Hector Corrada Bravo, Jayaram Kancherla |
| License | MIT + file LICENSE |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | GUI, Infrastructure, Software, Visualization |
| Package Short Url | https://bioconductor.org/packages/epivizrStandalone/ |
Citation
From within R, enter citation("epivizrStandalone"):
Hector Corrada Bravo, Jayaram Kancherla. epivizrStandalone: Run Epiviz Interactive Genomic Data Visualization App within R. doi:10.18129/B9.bioc.epivizrStandalone, R package version 1.41.0, https://bioconductor.org/packages/epivizrStandalone.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | epivizrStandalone_1.41.0.tar.gz |
| Windows binary (x86_64) | epivizrStandalone_1.41.0.zip |
| macOS binary (arm64) | epivizrStandalone_1.41.0.tgz |
| macOS binary (x86_64) | epivizrStandalone_1.41.0.tgz |
Dependencies
Depends: R (>= 3.2.3), epivizr (>= 2.3.6), methods
Imports: git2r, epivizrServer, Seqinfo, BiocGenerics, GenomicFeatures, S4Vectors
Suggests: testthat, knitr, rmarkdown, OrganismDbi (>= 1.13.9), Mus.musculus, Biobase, BiocStyle
Reverse dependencies
Suggests Me (1): scTreeViz