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epigenomix

This is the development version of epigenomix; for the stable release version, see epigenomix.

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Epigenetic and gene transcription data normalization and integration with mixture models

DOI: 10.18129/B9.bioc.epigenomix

Bioconductor version: Development (3.24)

A package for the integrative analysis of RNA-seq or microarray based gene transcription and histone modification data obtained by ChIP-seq. The package provides methods for data preprocessing and matching as well as methods for fitting bayesian mixture models in order to detect genes with differences in both data types.

Author: Hans-Ulrich Klein, Martin Schaefer

Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>

Citation (from within R, enter citation("epigenomix")):

Hans-Ulrich Klein, Martin Schaefer. epigenomix: Epigenetic and gene transcription data normalization and integration with mixture models. doi:10.18129/B9.bioc.epigenomix, R package version 1.53.0, https://bioconductor.org/packages/epigenomix.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("epigenomix")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("epigenomix")

Details

Package Archives

Follow Installation instructions to use this package in your R session.