eiR
This is the development version of eiR; for the stable release version, see eiR.
Accelerated similarity searching of small molecules
Bioconductor version: Development (3.20)
The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.
Author: Kevin Horan, Yiqun Cao and Tyler Backman
Maintainer: Thomas Girke <thomas.girke at ucr.edu>
Citation (from within R, enter
citation("eiR")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("eiR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("eiR")
eiR: Accelerated Similarity Searching of Small Molecules | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
INSTALL | Text | |
LICENSE | Text |
Details
biocViews | BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization |
Version | 1.45.0 |
In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
License | Artistic-2.0 |
Depends | R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI |
Imports | snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9) |
System Requirements | |
URL | https://github.com/girke-lab/eiR |
See More
Suggests | BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown, RSQLite |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | eiR_1.45.0.tar.gz |
Windows Binary (x86_64) | eiR_1.45.0.zip |
macOS Binary (x86_64) | eiR_1.45.0.tgz |
macOS Binary (arm64) | eiR_1.45.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/eiR |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/eiR |
Bioc Package Browser | https://code.bioconductor.org/browse/eiR/ |
Package Short Url | https://bioconductor.org/packages/eiR/ |
Package Downloads Report | Download Stats |