Welcome to the new bioconductor.org!

eiR

This is the development version of eiR; for the stable release version, see eiR.

Accelerated similarity searching of small molecules


Bioconductor version: Development (3.19)

The eiR package provides utilities for accelerated structure similarity searching of very large small molecule data sets using an embedding and indexing approach.

Author: Kevin Horan, Yiqun Cao and Tyler Backman

Maintainer: Thomas Girke <thomas.girke at ucr.edu>

Citation (from within R, enter citation("eiR")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("eiR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eiR")
eiR: Accelerated Similarity Searching of Small Molecules HTML R Script
Reference Manual PDF
NEWS Text
INSTALL Text
LICENSE Text

Details

biocViews BiomedicalInformatics, CellBasedAssays, Cheminformatics, Clustering, DataImport, Infrastructure, Metabolomics, MicrotitrePlateAssay, Pharmacogenetics, Pharmacogenomics, Proteomics, Software, Visualization
Version 1.43.0
In Bioconductor since BioC 2.12 (R-3.0) (11 years)
License Artistic-2.0
Depends R (>= 2.10.0), ChemmineR(>= 2.15.15), methods, DBI
Imports snow, tools, snowfall, RUnit, methods, ChemmineR, RCurl, digest, BiocGenerics, RcppAnnoy (>= 0.0.9)
System Requirements
URL https://github.com/girke-lab/eiR
See More
Suggests BiocStyle, knitcitations, knitr, knitrBootstrap, rmarkdown, RSQLite
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package eiR_1.43.0.tar.gz
Windows Binary eiR_1.43.0.zip (64-bit only)
macOS Binary (x86_64) eiR_1.43.0.tgz
macOS Binary (arm64) eiR_1.43.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/eiR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/eiR
Bioc Package Browser https://code.bioconductor.org/browse/eiR/
Package Short Url https://bioconductor.org/packages/eiR/
Package Downloads Report Download Stats