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deltaCaptureC

This is the development version of deltaCaptureC; for the stable release version, see deltaCaptureC.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10

This Package Discovers Meso-scale Chromatin Remodeling from 3C Data

DOI: 10.18129/B9.bioc.deltaCaptureC

Bioconductor version: Development (3.24)

This package discovers meso-scale chromatin remodelling from 3C data. 3C data is local in nature. It givens interaction counts between restriction enzyme digestion fragments and a preferred 'viewpoint' region. By binning this data and using permutation testing, this package can test whether there are statistically significant changes in the interaction counts between the data from two cell types or two treatments.

Author: Michael Shapiro [aut, cre] ORCID: 0000-0002-2769-9320

Maintainer: Michael Shapiro <michael.shapiro at crick.ac.uk>

Citation (from within R, enter citation("deltaCaptureC")):

Michael Shapiro. deltaCaptureC: This Package Discovers Meso-scale Chromatin Remodeling from 3C Data. doi:10.18129/B9.bioc.deltaCaptureC, R package version 1.27.0, https://bioconductor.org/packages/deltaCaptureC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("deltaCaptureC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("deltaCaptureC")

Details

Package Archives

Follow Installation instructions to use this package in your R session.