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crisprBwa

This is the development version of crisprBwa; for the stable release version, see crisprBwa.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15

BWA-based alignment of CRISPR gRNA spacer sequences

DOI: 10.18129/B9.bioc.crisprBwa

Bioconductor version: Development (3.24)

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Currently not supported on Windows machines.

Author: Jean-Philippe Fortin [aut, cre]

Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>

Citation (from within R, enter citation("crisprBwa")):

Jean-Philippe Fortin. crisprBwa: BWA-based alignment of CRISPR gRNA spacer sequences. doi:10.18129/B9.bioc.crisprBwa, R package version 1.17.0, https://bioconductor.org/packages/crisprBwa.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("crisprBwa")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("crisprBwa")

Details

Package Archives

Follow Installation instructions to use this package in your R session.