copa
This is the development version of copa; for the stable release version, see copa.
All Bioconductor versions of copa
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5
Functions to perform cancer outlier profile analysis.
Bioconductor version: 3.24 · Package version: 1.81.0
COPA is a method to find genes that undergo recurrent fusion in a given cancer type by finding pairs of genes that have mutually exclusive outlier profiles.
Author: James W. MacDonald
Maintainer: James W. MacDonald <jmacdon at u.washington.edu>
Citation
From within R, enter citation("copa"):
James W. MacDonald. copa: Functions to perform cancer outlier profile analysis. doi:10.18129/B9.bioc.copa, R package version 1.81.0, https://bioconductor.org/packages/copa.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("copa")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.81.0 |
| License | Artistic-2.0 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.5 or earlier (R-2.10) (16 years) |
| Downloads rank | 1000 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DifferentialExpression, OneChannel, Software, TwoChannel, Visualization |
| Package Short Url | https://bioconductor.org/packages/copa/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("copa")| copa Overview | R Script | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | copa_1.81.0.tar.gz |
| Windows binary (x86_64) | copa_1.81.0.zip |
| macOS binary (arm64) | copa_1.81.0.tgz |
| macOS binary (x86_64) | copa_1.81.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/copa |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/copa |
| Package Downloads Report | Download Stats |