cnvGSA
This is the development version of cnvGSA; for the stable release version, see cnvGSA.
All Bioconductor versions of cnvGSA
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10
Gene Set Analysis of (Rare) Copy Number Variants
Bioconductor version: 3.24 · Package version: 1.57.0
This package is intended to facilitate gene-set association with rare CNVs in case-control studies.
Author: Daniele Merico <daniele.merico at gmail.com>, Robert Ziman <rziman at gmail.com>; packaged by Joseph Lugo <joseph.r.lugo at gmail.com>
Maintainer: Joseph Lugo <joseph.r.lugo at gmail.com>
Citation
From within R, enter citation("cnvGSA"):
Daniele Merico, Robert Ziman, packaged by Joseph Lugo. cnvGSA: Gene Set Analysis of (Rare) Copy Number Variants. doi:10.18129/B9.bioc.cnvGSA, R package version 1.57.0, https://bioconductor.org/packages/cnvGSA.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("cnvGSA")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.57.0 |
| License | LGPL |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 2.10 (R-2.15) (14 years) |
| Downloads rank | 1233 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | MultipleComparison, Software |
| Package Short Url | https://bioconductor.org/packages/cnvGSA/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cnvGSA")| cnvGSA - Gene-Set Analysis of Rare Copy Number Variants | |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | cnvGSA_1.57.0.tar.gz |
| Windows binary (x86_64) | cnvGSA_1.57.0.zip |
| macOS binary (arm64) | cnvGSA_1.57.0.tgz |
| macOS binary (x86_64) | cnvGSA_1.57.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/cnvGSA |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cnvGSA |
| Package Downloads Report | Download Stats |
Dependencies
Depends: brglm, doParallel, foreach, GenomicRanges, methods, splitstackshape
Suggests: cnvGSAdata, org.Hs.eg.db
Reverse dependencies
Depends On Me (1): cnvGSAdata