chromPlot

This is the development version of chromPlot; for the stable release version, see chromPlot.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3

Global visualization tool of genomic data

Bioconductor version: Development (3.24)

Package designed to visualize genomic data along the chromosomes, where the vertical chromosomes are sorted by number, with sex chromosomes at the end.

Author: Ricardo A. Verdugo and Karen Y. Orostica

Maintainer: Karen Y. Orostica <korostica09 at gmail.com>

Citation (from within R, enter citation("chromPlot")):

Ricardo A. Verdugo and Karen Y. Orostica. chromPlot: Global visualization tool of genomic data. doi:10.18129/B9.bioc.chromPlot, R package version 1.41.0, https://bioconductor.org/packages/chromPlot.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("chromPlot")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromPlot")

General Manual	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Annotation, DataRepresentation, FunctionalGenomics, Genetics, Sequencing, Software, Visualization
Version	1.41.0
In Bioconductor since	BioC 3.3 (R-3.3) (10.5 years)
License	GPL (>= 2)
Depends	stats, utils, graphics, grDevices, datasets, base, biomaRt, GenomicRanges, R (>= 3.1.0)
Imports
System Requirements
URL

Suggests	qtl, GenomicFeatures, TxDb.Hsapiens.UCSC.hg19.knownGene
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	chromPlot_1.41.0.tar.gz
Windows Binary (x86_64)	chromPlot_1.41.0.zip
macOS Binary (big-sur-x86_64)	chromPlot_1.41.0.tgz
macOS Binary (sonoma-arm64)	chromPlot_1.41.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/chromPlot
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/chromPlot
Package Short Url	https://bioconductor.org/packages/chromPlot/
Package Downloads Report	Download Stats