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chromDraw

This is the development version of chromDraw; for the stable release version, see chromDraw.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.

DOI: 10.18129/B9.bioc.chromDraw

Bioconductor version: Development (3.24)

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University

Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>

Citation (from within R, enter citation("chromDraw")):

Jan Janecka, Ing., Mgr. CEITEC Masaryk University. chromDraw: chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion. doi:10.18129/B9.bioc.chromDraw, R package version 2.43.0, https://bioconductor.org/packages/chromDraw.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("chromDraw")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromDraw")

Details

Package Archives

Follow Installation instructions to use this package in your R session.