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chromDraw

This is the development version of chromDraw; for the stable release version, see chromDraw.

chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.


Bioconductor version: Development (3.19)

ChromDraw is a R package for drawing the schemes of karyotype(s) in the linear and circular fashion. It is possible to visualized cytogenetic marsk on the chromosomes. This tool has own input data format. Input data can be imported from the GenomicRanges data structure. This package can visualized the data in the BED file format. Here is requirement on to the first nine fields of the BED format. Output files format are *.eps and *.svg.

Author: Jan Janecka, Ing., Mgr. CEITEC Masaryk University

Maintainer: Jan Janecka <jan.janecka at ceitec.muni.cz>

Citation (from within R, enter citation("chromDraw")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("chromDraw")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("chromDraw")
chromDraw PDF R Script
Reference Manual PDF
NEWS Text

Details

biocViews Software
Version 2.33.0
In Bioconductor since BioC 3.1 (R-3.2) (9 years)
License GPL-3
Depends R (>= 3.0.0)
Imports Rcpp (>= 0.11.1), GenomicRanges(>= 1.17.46)
System Requirements Rtools (>= 3.1)
URL www.plantcytogenomics.org/chromDraw
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package chromDraw_2.33.0.tar.gz
Windows Binary chromDraw_2.33.0.zip
macOS Binary (x86_64) chromDraw_2.33.0.tgz
macOS Binary (arm64) chromDraw_2.33.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/chromDraw
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/chromDraw
Bioc Package Browser https://code.bioconductor.org/browse/chromDraw/
Package Short Url https://bioconductor.org/packages/chromDraw/
Package Downloads Report Download Stats