apeglm
This is the development version of apeglm; for the stable release version, see apeglm.
Approximate posterior estimation for GLM coefficients
Bioconductor version: Development (3.19)
apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.
Author: Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]
Maintainer: Anqi Zhu <anqizhu at live.unc.edu>
citation("apeglm")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("apeglm")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
Reference Manual |
Details
biocViews | Bayesian, DifferentialExpression, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software |
Version | 1.25.0 |
In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
License | GPL-2 |
Depends | |
Imports | emdbook, SummarizedExperiment, GenomicRanges, methods, stats, utils, Rcpp |
System Requirements | |
URL |
See More
Suggests | DESeq2, airway, knitr, rmarkdown, testthat |
Linking To | Rcpp, RcppEigen, RcppNumerical |
Enhances | |
Depends On Me | rnaseqGene |
Imports Me | airpart, debrowser, DiffBind, ERSSA, Rmmquant, TEKRABber |
Suggests Me | bambu, BRGenomics, dar, DESeq2, fishpond, NanoporeRNASeq |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | |
Windows Binary | |
macOS Binary (x86_64) | |
macOS Binary (arm64) | |
Source Repository | git clone https://git.bioconductor.org/packages/apeglm |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/apeglm |
Package Short Url | https://bioconductor.org/packages/apeglm/ |
Package Downloads Report | Download Stats |