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apComplex

This is the development version of apComplex; for the stable release version, see apComplex.

Estimate protein complex membership using AP-MS protein data


Bioconductor version: Development (3.19)

Functions to estimate a bipartite graph of protein complex membership using AP-MS data.

Author: Denise Scholtens <dscholtens at northwestern.edu>

Maintainer: Denise Scholtens <dscholtens at northwestern.edu>

Citation (from within R, enter citation("apComplex")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("apComplex")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("apComplex")
apComplex PDF R Script
Reference Manual PDF

Details

biocViews GraphAndNetwork, ImmunoOncology, MassSpectrometry, NetworkInference, Software
Version 2.69.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 19 years)
License LGPL
Depends R (>= 2.10), graph, RBGL
Imports Rgraphviz, stats, org.Sc.sgd.db
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package apComplex_2.69.0.tar.gz
Windows Binary apComplex_2.69.0.zip
macOS Binary (x86_64) apComplex_2.69.0.tgz
macOS Binary (arm64) apComplex_2.69.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/apComplex
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/apComplex
Bioc Package Browser https://code.bioconductor.org/browse/apComplex/
Package Short Url https://bioconductor.org/packages/apComplex/
Package Downloads Report Download Stats