anndataR
This is the development version of anndataR; for the stable release version, see anndataR.
All Bioconductor versions of anndataR
3.24 (devel), 3.23 (release), 3.22
AnnData interoperability in R
Bioconductor version: 3.24 · Package version: 1.3.2
Bring the power and flexibility of AnnData to the R ecosystem, allowing you to effortlessly manipulate and analyse your single-cell data. This package lets you work with backed h5ad and zarr files, directly access various slots (e.g. X, obs, var), or convert the data into SingleCellExperiment and Seurat objects.
Author: Robrecht Cannoodt [aut, cre] (ORCID: 
, github: rcannood), Luke Zappia [aut] (ORCID: , github: lazappi), Martin Morgan [aut] (ORCID: , github: mtmorgan), Louise Deconinck [aut] (ORCID: , github: LouiseDck), Danila Bredikhin [ctb] (ORCID: , github: gtca), Isaac Virshup [ctb] (ORCID: , github: ivirshup), Brian Schilder [ctb] (ORCID: , github: bschilder), Chananchida Sang-aram [ctb] (ORCID: , github: csangara), Artür Manukyan [ctb] (ORCID: , github: Artur-man), Hugo Gruson [ctb] (ORCID: , github: Bisaloo), Data Intuitive [fnd], Chan Zuckerberg Initiative [fnd], scverse consortium [spn]
Maintainer: Robrecht Cannoodt <rcannood at gmail.com>
Citation
From within R, enter citation("anndataR"):
Robrecht Cannoodt, Luke Zappia, Martin Morgan, Louise Deconinck. anndataR: AnnData interoperability in R. doi:10.18129/B9.bioc.anndataR, R package version 1.3.2, https://bioconductor.org/packages/anndataR.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("anndataR")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.3.2 |
| License | MIT + file LICENSE |
| URL | https://anndataR.scverse.org/ https://github.com/scverse/anndataR |
| Bug Reports | https://github.com/scverse/anndataR/issues |
| Last updated | 2026-09-17 |
| In Bioconductor since | BioC 3.22 (R-4.5) (less than a year) |
| Downloads rank | 271 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, SingleCell, Software |
| Package Short Url | https://bioconductor.org/packages/anndataR/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("anndataR")| Python Integration with anndataR | HTML | R Script |
| Read/write Seurat objects using anndataR | HTML | R Script |
| Read/write SingleCellExperiment objects using anndataR | HTML | R Script |
| Using anndataR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | anndataR_1.3.2.tar.gz |
| Windows binary (x86_64) | anndataR_1.3.2.zip |
| macOS binary (arm64) | anndataR_1.3.2.tgz |
| macOS binary (x86_64) | anndataR_1.3.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/anndataR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/anndataR |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.5.0)
Imports: cli, lifecycle, Matrix, methods, purrr, R6 (>= 2.4.0), reticulate (>= 1.41.1), rlang, stats
Suggests: BiocFileCache, BiocStyle, DelayedArray, HDF5Array, jsonlite, knitr, processx, rhdf5 (>= 2.57.5), Rarr (>= 2.1.13), rmarkdown, S4Vectors, Seurat, SeuratObject, SingleCellExperiment, spelling, SummarizedExperiment, testthat (>= 3.0.0), vctrs, withr, yaml
Reverse dependencies
Imports Me (2): cellNexus, spatialdataR
Suggests Me (8): dyngen, GEOquery, HistoImagePlot, imageFeatureTCGA, imageTCGAutils, savingBiocObjects, SpaceMarkers, ZarrArray