alevinQC

DOI: 10.18129/B9.bioc.alevinQC    

This is the development version of alevinQC; to use it, please install the devel version of Bioconductor.

Generate QC Reports For Alevin Output

Bioconductor version: Development (3.10)

Generate QC reports summarizing the output from an alevin run. Reports can be generated as html or pdf files, or as shiny applications.

Author: Charlotte Soneson [aut, cre] , Avi Srivastava [aut]

Maintainer: Charlotte Soneson <charlottesoneson at gmail.com>

Citation (from within R, enter citation("alevinQC")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("alevinQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("alevinQC")

 

HTML R Script alevinQC
PDF   Reference Manual
Text   NEWS
Text   LICENSE

Details

biocViews QualityControl, SingleCell, Software
Version 1.1.1
In Bioconductor since BioC 3.9 (R-3.6) (< 6 months)
License MIT + file LICENSE
Depends R (>= 3.6)
Imports rmarkdown, tools, methods, ggplot2, GGally, dplyr, rjson, shiny, shinydashboard, DT, stats, utils, tximport(>= 1.11.5), cowplot
LinkingTo
Suggests knitr, BiocStyle, testthat
SystemRequirements
Enhances
URL https://github.com/csoneson/alevinQC
BugReports https://github.com/csoneson/alevinQC/issues
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package alevinQC_1.1.1.tar.gz
Windows Binary alevinQC_1.1.1.zip
Mac OS X 10.11 (El Capitan) alevinQC_1.1.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/alevinQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/alevinQC
Package Short Url http://bioconductor.org/packages/alevinQC/
Package Downloads Report Download Stats

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