alabaster.vcf
Save and Load Variant Data to/from File
Bioconductor version: 3.24 · Package version: 1.13.1
Other Bioconductor versions
devel is the development version; release is the current stable one.
3.24 (devel), 3.23 (release)
Save variant calling SummarizedExperiment to file and load them back as VCF objects. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("alabaster.vcf")Details
| Maintainer | Aaron Lun <infinite.monkeys.with.keyboards@gmail.com> |
| Author | Aaron Lun [aut, cre] |
| License | MIT + file LICENSE |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | DataImport, DataRepresentation, Software |
| Package Short Url | https://bioconductor.org/packages/alabaster.vcf/ |
Citation
From within R, enter citation("alabaster.vcf"):
Aaron Lun. alabaster.vcf: Save and Load Variant Data to/from File. doi:10.18129/B9.bioc.alabaster.vcf, R package version 1.13.1, https://bioconductor.org/packages/alabaster.vcf.
Generated from the package metadata; it may differ from the package's own citation.
Download
Follow the installation instructions to use this package in your R session.
| Source package | alabaster.vcf_1.13.1.tar.gz |
| Windows binary (x86_64) | alabaster.vcf_1.13.0.zip |
| macOS binary (arm64) | alabaster.vcf_1.13.0.tgz |
| macOS binary (x86_64) | alabaster.vcf_1.13.0.tgz |
Dependencies
Depends: alabaster.base, VariantAnnotation
Imports: methods, S4Vectors, alabaster.se, alabaster.string, Rsamtools
Reverse dependencies
Imports Me (1): alabaster