alabaster.treese
This is the development version of alabaster.treese; to use it, please install the devel version of Bioconductor.
Load and Save TreeSummarizedExperiment from File
Bioconductor version: Development (3.24)
Save TreeSummarizedExperiment into file artifacts, and load them back into memory. This is a more portable alternative to serialization of such objects into RDS files. Each artifact is associated with metadata for further interpretation; downstream applications can enrich this metadata with context-specific properties.
Author: Tuomas Borman [aut, cre] 
, Leo Lahti [aut]
Maintainer: Tuomas Borman <tuomas.v.borman at utu.fi>
citation("alabaster.treese")):Tuomas Borman, Leo Lahti. alabaster.treese: Load and Save TreeSummarizedExperiment from File. doi:10.18129/B9.bioc.alabaster.treese, R package version 0.99.0, https://bioconductor.org/packages/alabaster.treese.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("alabaster.treese")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("alabaster.treese")| Saving TreeSummarizedExperiments to artifacts and back again | HTML |
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | DataImport, DataRepresentation, Microbiome, Phylogenetics, Software |
| Version | 0.99.0 |
| In Bioconductor since | BioC 3.24 (R-4.6) |
| License | Artistic-2.0 |
| Depends | TreeSummarizedExperiment, alabaster.base |
| Imports | methods, alabaster.sce, alabaster.string, Biostrings, jsonlite |
| System Requirements | |
| URL | https://github.com/microbiome/alabaster.treese https://microbiome.github.io/alabaster.treese |
| Bug Reports | https://github.com/microbiome/alabaster.treese/issues |
See More
| Suggests | ape, knitr, testthat, BiocStyle, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (big-sur-x86_64) | |
| macOS Binary (sonoma-arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/alabaster.treese |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/alabaster.treese |
| Package Short Url | https://bioconductor.org/packages/alabaster.treese/ |
| Package Downloads Report | Download Stats |