affyContam

This is the development version of affyContam; for the stable release version, see affyContam.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

structured corruption of affymetrix cel file data

Bioconductor version: Development (3.24)

structured corruption of cel file data to demonstrate QA effectiveness

Author: V. Carey

Maintainer: V. Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("affyContam")):

V. Carey. affyContam: structured corruption of affymetrix cel file data. doi:10.18129/B9.bioc.affyContam, R package version 1.71.0, https://bioconductor.org/packages/affyContam.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("affyContam")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("affyContam")

affy contamination tools	PDF	R Script
Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.71.0
In Bioconductor since	BioC 2.3 (R-2.8) (18 years)
License	Artistic-2.0
Depends	R (>= 2.7.0), tools, methods, utils, Biobase, affy, affydata
Imports
System Requirements
URL

Suggests	hgu95av2cdf
Linking To
Enhances
Depends On Me
Imports Me	arrayMvout
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	affyContam_1.71.0.tar.gz
Windows Binary (x86_64)	affyContam_1.71.0.zip
macOS Binary (big-sur-x86_64)	affyContam_1.71.0.tgz
macOS Binary (sonoma-arm64)	affyContam_1.71.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/affyContam
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/affyContam
Package Short Url	https://bioconductor.org/packages/affyContam/
Package Downloads Report	Download Stats