adverSCarial

DOI: 10.18129/B9.bioc.adverSCarial  

This is the development version of adverSCarial; for the stable release version, see adverSCarial.

adverSCarial, generate and analyze the vulnerability of scRNA-seq classifiers to adversarial attacks

Bioconductor version: Development (3.19)

adverSCarial is an R Package designed for generating and analyzing the vulnerability of scRNA-seq classifiers to adversarial attacks. The package is versatile and provides a format for integrating any type of classifier. It offers functions for studying and generating two types of attacks, single gene attack and max change attack. The single gene attack involves making a small modification to the input to alter the classification. The max change attack involves making a large modification to the input without changing its classification. The package provides a comprehensive solution for evaluating the robustness of scRNA-seq classifiers against adversarial attacks.

Author: Ghislain FIEVET [aut, cre] , Sébastien HERGALANT [aut]

Maintainer: Ghislain FIEVET <ghislain.fievet at gmail.com>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("adverSCarial")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("adverSCarial")

 

HTML	R Script	Vign01_adverSCarial
HTML	R Script	Vign02_overView_analysis
HTML		Vign03_adaptClassifier
HTML		Vign04_advRandWalkMinChange
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	Classification, SingleCell, Software, Transcriptomics
Version	1.1.0
In Bioconductor since	BioC 3.18 (R-4.3) (< 6 months)
License	MIT + file LICENSE
Depends
Imports	gtools, S4Vectors, methods, DelayedArray
LinkingTo
Suggests	knitr, RUnit, BiocGenerics, TENxPBMCData, CHETAH, stringr, LoomExperiment
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	adverSCarial_1.1.0.tar.gz
Windows Binary	adverSCarial_1.1.0.zip
macOS Binary (x86_64)	adverSCarial_1.1.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/adverSCarial
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/adverSCarial
Bioc Package Browser	https://code.bioconductor.org/browse/adverSCarial/
Package Short Url	https://bioconductor.org/packages/adverSCarial/
Package Downloads Report	Download Stats