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XeniumIO

This is the development version of XeniumIO; for the stable release version, see XeniumIO.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21

Import and represent Xenium data from the 10X Xenium Analyzer

DOI: 10.18129/B9.bioc.XeniumIO

Bioconductor version: Development (3.24)

The package allows users to readily import spatial data obtained from the 10X Xenium Analyzer pipeline. Supported formats include 'parquet', 'h5', and 'mtx' files. The package mainly represents data as SpatialExperiment objects.

Author: Marcel Ramos [aut, cre] ORCID: 0000-0002-3242-0582 , Dario Righelli [ctb], Estella Dong [ctb], NCI [fnd] (GrantNo.: U24CA289073)

Maintainer: Marcel Ramos <marcel.ramos at sph.cuny.edu>

Citation (from within R, enter citation("XeniumIO")):

Marcel Ramos. XeniumIO: Import and represent Xenium data from the 10X Xenium Analyzer. doi:10.18129/B9.bioc.XeniumIO, R package version 1.5.0, https://bioconductor.org/packages/XeniumIO.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("XeniumIO")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("XeniumIO")

Details

Package Archives

Follow Installation instructions to use this package in your R session.