Wrench
This is the development version of Wrench; for the stable release version, see Wrench.
All Bioconductor versions of Wrench
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8
Wrench normalization for sparse count data
Bioconductor version: 3.24 · Package version: 1.31.0
Wrench is a package for normalization sparse genomic count data, like that arising from 16s metagenomic surveys.
Author: Senthil Kumar Muthiah [aut], Hector Corrada Bravo [aut, cre]
Maintainer: Hector Corrada Bravo <hcorrada at gmail.com>
Citation
From within R, enter citation("Wrench"):
Senthil Kumar Muthiah, Hector Corrada Bravo. Wrench: Wrench normalization for sparse count data. doi:10.18129/B9.bioc.Wrench, R package version 1.31.0, https://bioconductor.org/packages/Wrench.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Wrench")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.31.0 |
| License | Artistic-2.0 |
| URL | https://github.com/HCBravoLab/Wrench |
| Bug Reports | https://github.com/HCBravoLab/Wrench/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| Downloads rank | 190 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Normalization, Sequencing, Software |
| Package Short Url | https://bioconductor.org/packages/Wrench/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Wrench")| Wrench | HTML | R Script |
| Reference Manual |
Download
Follow the installation instructions to use this package in your R session.
| Source package | Wrench_1.31.0.tar.gz |
| Windows binary (x86_64) | Wrench_1.31.0.zip |
| macOS binary (arm64) | Wrench_1.31.0.tgz |
| macOS binary (x86_64) | Wrench_1.31.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Wrench |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Wrench |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.0)
Imports: limma, matrixStats, locfit, stats, graphics
Suggests: knitr, rmarkdown, metagenomeSeq, DESeq2, edgeR
Reverse dependencies
Imports Me (1): metagenomeSeq