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TnT

This is the development version of TnT; for the stable release version, see TnT.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6

Interactive Visualization for Genomic Features


Bioconductor version: Development (3.24)

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Jialin Ma, Miguel Pignatelli, Toby Hocking. TnT: Interactive Visualization for Genomic Features. doi:10.18129/B9.bioc.TnT, R package version 1.35.0, https://bioconductor.org/packages/TnT.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TnT")
Introduction to TnT HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews Infrastructure, Software, Visualization
Version1.35.0
In Bioconductor sinceBioC 3.6 (R-3.4) (9 years)
License AGPL-3
Depends R (>= 3.4), GenomicRanges
Imports methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
System Requirements
URLhttps://github.com/Marlin-Na/TnT
Bug Reportshttps://github.com/Marlin-Na/TnT/issues
See More
Suggests GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TnT_1.35.0.tar.gz
Windows Binary (x86_64) TnT_1.35.0.zip
macOS Binary (big-sur-x86_64) TnT_1.35.0.tgz
macOS Binary (sonoma-arm64) TnT_1.35.0.tgz
Source Repositorygit clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/TnT
Package Short Url https://bioconductor.org/packages/TnT/
Package Downloads ReportDownload Stats