TnT

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This is the development version of TnT; for the stable release version, see TnT.

Interactive Visualization for Genomic Features

Bioconductor version: Development (3.19)

A R interface to the TnT javascript library (https://github.com/ tntvis) to provide interactive and flexible visualization of track-based genomic data.

Author: Jialin Ma [cre, aut], Miguel Pignatelli [aut], Toby Hocking [aut]

Maintainer: Jialin Ma <marlin- at gmx.cn>

Citation (from within R, enter citation("TnT")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TnT")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software, Visualization
Version	1.25.1
In Bioconductor since	BioC 3.6 (R-3.4) (6.5 years)
License	AGPL-3
Depends	R (>= 3.4), GenomicRanges
Imports	methods, stats, utils, grDevices, htmlwidgets, jsonlite, data.table, Biobase, GenomeInfoDb, IRanges, S4Vectors, knitr
System Requirements
URL	https://github.com/Marlin-Na/TnT
Bug Reports	https://github.com/Marlin-Na/TnT/issues

Suggests	GenomicFeatures, shiny, BiocManager, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TnT
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TnT
Package Short Url	https://bioconductor.org/packages/TnT/
Package Downloads Report	Download Stats