TargetScore
This is the development version of TargetScore; for the stable release version, see TargetScore.
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information
Bioconductor version: Development (3.20)
Infer the posterior distributions of microRNA targets by probabilistically modelling the likelihood microRNA-overexpression fold-changes and sequence-based scores. Variaitonal Bayesian Gaussian mixture model (VB-GMM) is applied to log fold-changes and sequence scores to obtain the posteriors of latent variable being the miRNA targets. The final targetScore is computed as the sigmoid-transformed fold-change weighted by the averaged posteriors of target components over all of the features.
Author: Yue Li
Maintainer: Yue Li <yueli at cs.toronto.edu>
citation("TargetScore")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TargetScore")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TargetScore")
TargetScore: Infer microRNA targets using microRNA-overexpression data and sequence information | R Script | |
Reference Manual | ||
NEWS | Text |
Details
biocViews | Software, miRNA |
Version | 1.43.0 |
In Bioconductor since | BioC 2.13 (R-3.0) (11 years) |
License | GPL-2 |
Depends | pracma, Matrix |
Imports | |
System Requirements | |
URL | http://www.cs.utoronto.ca/~yueli/software.html |
See More
Suggests | TargetScoreData, gplots, Biobase, GEOquery |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | TargetScoreData |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | TargetScore_1.43.0.tar.gz |
Windows Binary | TargetScore_1.43.0.zip |
macOS Binary (x86_64) | TargetScore_1.43.0.tgz |
macOS Binary (arm64) | TargetScore_1.43.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/TargetScore |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TargetScore |
Bioc Package Browser | https://code.bioconductor.org/browse/TargetScore/ |
Package Short Url | https://bioconductor.org/packages/TargetScore/ |
Package Downloads Report | Download Stats |