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TEQC

This is the development version of TEQC; for the stable release version, see TEQC.

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Quality control for target capture experiments

DOI: 10.18129/B9.bioc.TEQC

Bioconductor version: Development (3.24)

Target capture experiments combine hybridization-based (in solution or on microarrays) capture and enrichment of genomic regions of interest (e.g. the exome) with high throughput sequencing of the captured DNA fragments. This package provides functionalities for assessing and visualizing the quality of the target enrichment process, like specificity and sensitivity of the capture, per-target read coverage and so on.

Author: M. Hummel, S. Bonnin, E. Lowy, G. Roma

Maintainer: Sarah Bonnin <Sarah.Bonnin at crg.eu>

Citation (from within R, enter citation("TEQC")):

M. Hummel, S. Bonnin, E. Lowy, G. Roma. TEQC: Quality control for target capture experiments. doi:10.18129/B9.bioc.TEQC, R package version 4.35.0, https://bioconductor.org/packages/TEQC.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TEQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TEQC")

Details

Package Archives

Follow Installation instructions to use this package in your R session.