Bioconductor Developer Survey 2026 Now Open!

TDbasedUFEadv

This is the development version of TDbasedUFEadv; for the stable release version, see TDbasedUFEadv.

All versions 3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17

Advanced package of tensor decomposition based unsupervised feature extraction


Bioconductor version: Development (3.24)

This is an advanced version of TDbasedUFE, which is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. In contrast to TDbasedUFE which can perform simple the feature selection and the multiomics analyses, this package can perform more complicated and advanced features, but they are not so popularly required. Only users who require more specific features can make use of its functionality.

Author: Y-h. Taguchi [aut, cre] ORCID iD ORCID: 0000-0003-0867-8986

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("TDbasedUFEadv")):

Y-h. Taguchi. TDbasedUFEadv: Advanced package of tensor decomposition based unsupervised feature extraction. doi:10.18129/B9.bioc.TDbasedUFEadv, R package version 1.13.3, https://bioconductor.org/packages/TDbasedUFEadv.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("TDbasedUFEadv")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TDbasedUFEadv")
Enrichment HTML R Script
Explanation of TDbasedUFEadv HTML R Script
How to use TDbasedUFEadv HTML R Script
Reference ManualPDF
NEWSText

Details

biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version1.13.3
In Bioconductor sinceBioC 3.17 (R-4.3) (3.5 years)
License GPL-3
Depends R (>= 3.5.0)
Imports TDbasedUFE, Biobase, GenomicRanges, utils, rTensor, methods, graphics, stats, hash, shiny
System Requirements
URLhttps://github.com/tagtag/TDbasedUFEadv
Bug Reportshttps://github.com/tagtag/TDbasedUFEadv/issues
See More
Suggests knitr, rmarkdown, testthat (>= 3.0.0), BiocStyle, MOFAdata, curatedTCGAData, MultiAssayExperiment, SummarizedExperiment, STRINGdb, enrichR, enrichplot, DOSE, gson, ggplot2
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TDbasedUFEadv_1.13.3.tar.gz
Windows Binary (x86_64)
macOS Binary (big-sur-x86_64) TDbasedUFEadv_1.13.3.tgz
macOS Binary (sonoma-arm64)
Source Repositorygit clone https://git.bioconductor.org/packages/TDbasedUFEadv
Source Repository (Developer Access)git clone git@git.bioconductor.org:packages/TDbasedUFEadv
Package Short Url https://bioconductor.org/packages/TDbasedUFEadv/
Package Downloads ReportDownload Stats