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This is the development version of TDbasedUFE; for the stable release version, see TDbasedUFE.

Tensor Decomposition Based Unsupervised Feature Extraction

Bioconductor version: Development (3.19)

This is a comprehensive package to perform Tensor decomposition based unsupervised feature extraction. It can perform unsupervised feature extraction. It uses tensor decomposition. It is applicable to gene expression, DNA methylation, and histone modification etc. It can perform multiomics analysis. It is also potentially applicable to single cell omics data sets.

Author: Y-h. Taguchi [aut, cre]

Maintainer: Y-h. Taguchi <tag at granular.com>

Citation (from within R, enter citation("TDbasedUFE")):


To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:

QuickStart HTML R Script
TDbasedUFE HTML R Script
Reference Manual PDF


biocViews FeatureExtraction, GeneExpression, MethylationArray, SingleCell, Software
Version 1.3.0
In Bioconductor since BioC 3.17 (R-4.3) (1 year)
License GPL-3
Imports GenomicRanges, rTensor, readr, methods, MOFAdata, tximport, tximportData, graphics, stats, utils, shiny
System Requirements
URL https://github.com/tagtag/TDbasedUFE
Bug Reports https://github.com/tagtag/TDbasedUFE/issues
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Suggests BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0)
Linking To
Depends On Me
Imports Me TDbasedUFEadv
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package TDbasedUFE_1.3.0.tar.gz
Windows Binary TDbasedUFE_1.3.0.zip
macOS Binary (x86_64) TDbasedUFE_1.3.0.tgz
macOS Binary (arm64) TDbasedUFE_1.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TDbasedUFE
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TDbasedUFE
Bioc Package Browser https://code.bioconductor.org/browse/TDbasedUFE/
Package Short Url https://bioconductor.org/packages/TDbasedUFE/
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