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SwarnSeq

This is the development version of SwarnSeq; to use it, please install the devel version of Bioconductor.

Differential Expression and Differential Zero Inflation analysis

DOI: 10.18129/B9.bioc.SwarnSeq

Bioconductor version: Development (3.24)

This R package performs differential expression and differential zero inflation analysis of single-cell RNA-seq (scRNA-seq) UMI counts data through adjusting cell capture efficiency.

Author: Samarendra Das [aut, cre] ORCID: 0000-0002-0263-7027 , Satyajit Chhatoi [aut], Indian Council of Agricultural Research [fnd], Science and Engineering Research Board [fnd] (Core Research Grant (CRG004960))

Maintainer: Samarendra Das <samarendra.das at icar.org.in>

Citation (from within R, enter citation("SwarnSeq")):

Samarendra Das, Satyajit Chhatoi. SwarnSeq: Differential Expression and Differential Zero Inflation analysis. doi:10.18129/B9.bioc.SwarnSeq, R package version 0.99.5, https://bioconductor.org/packages/SwarnSeq.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("SwarnSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SwarnSeq")

Details

Package Archives

Follow Installation instructions to use this package in your R session.