SELEX
This is the development version of SELEX; for the stable release version, see SELEX.
Functions for analyzing SELEX-seq data
Bioconductor version: Development (3.20)
Tools for quantifying DNA binding specificities based on SELEX-seq data.
Author: Chaitanya Rastogi, Dahong Liu, Lucas Melo, and Harmen J. Bussemaker
Maintainer: Harmen J. Bussemaker <hjb2004 at columbia.edu>
Citation (from within R, enter
citation("SELEX")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SELEX")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SELEX")
Motif Discovery with SELEX-seq | R Script | |
Reference Manual |
Details
biocViews | GeneRegulation, MotifAnnotation, MotifDiscovery, Software, Transcription |
Version | 1.37.0 |
In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
License | GPL (>=2) |
Depends | rJava (>= 0.5-0), Biostrings(>= 2.26.0) |
Imports | stats, utils |
System Requirements | Java (>= 1.5) |
URL | https://bussemakerlab.org/site/software/ |
See More
Suggests | |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SELEX_1.37.0.tar.gz |
Windows Binary (x86_64) | SELEX_1.37.0.zip |
macOS Binary (x86_64) | SELEX_1.37.0.tgz |
macOS Binary (arm64) | SELEX_1.37.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SELEX |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SELEX |
Bioc Package Browser | https://code.bioconductor.org/browse/SELEX/ |
Package Short Url | https://bioconductor.org/packages/SELEX/ |
Package Downloads Report | Download Stats |