RmzTabM
R API for the mzTab-M Reference Implementation
Bioconductor version: 3.24 · Package version: 0.99.2
The RmzTabM package provides functions to read and write files in the HUPO-PSI mzTab-M file format for reporting of results from metabolomics and lipidomics experiments. This package represents the reference implementation for mzTab-M import/export for R. Core, low level functions allow to format and parse the individual sections of the mzTab-M format. These functions are designed to be re-used by other packages implementing import/export of results in mzTab-M.
Installation
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RmzTabM")Details
| Maintainer | Johannes Rainer <johannes.rainer@eurac.edu> |
| Author | Nils Hoffmann [ctb] (ORCID: <https://orcid.org/0000-0002-6540-6875>), Steffen Neumann [ctb] (ORCID: <https://orcid.org/0000-0002-7899-7192>), Johannes Rainer [aut, cre] (ORCID: <https://orcid.org/0000-0002-6977-7147>), Philippine Louail [aut] (ORCID: <https://orcid.org/0009-0007-5429-6846>, fnd: European Union HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising and Unifying Blood Metabolic Analysis Networks), Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.) |
| License | Artistic-2.0 |
| URL | https://github.com/RforMassSpectrometry/RmzTabM |
| Bug Reports | https://github.com/RforMassSpectrometry/RmzTabM/issues |
| System Requirements | pandoc, quarto |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Proteomics, Software |
| Package Short Url | https://bioconductor.org/packages/RmzTabM/ |
Citation
From within R, enter citation("RmzTabM"):
Johannes Rainer, Philippine Louail, Gabriele Tomè. RmzTabM: R API for the mzTab-M Reference Implementation. doi:10.18129/B9.bioc.RmzTabM, R package version 0.99.2, https://bioconductor.org/packages/RmzTabM.
Generated from the package metadata; it may differ from the package's own citation.
Documentation
Download
Follow the installation instructions to use this package in your R session.
| Source package | RmzTabM_0.99.2.tar.gz |
| Windows binary (x86_64) | RmzTabM_0.99.2.zip |
| macOS binary (arm64) | RmzTabM_0.99.2.tgz |
| macOS binary (x86_64) | RmzTabM_0.99.2.tgz |
Dependencies
Depends: R (>= 4.5)
Imports: data.table, methods, SummarizedExperiment, stats, utils
Suggests: testthat, pkgdown, BiocStyle, knitr, rmarkdown, quarto, pander