RepViz
This is the development version of RepViz; for the stable release version, see RepViz.
All Bioconductor versions of RepViz
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9
Replicate oriented Visualization of a genomic region
Bioconductor version: 3.24 · Package version: 1.29.0
RepViz enables the view of a genomic region in a simple and efficient way. RepViz allows simultaneous viewing of both intra- and intergroup variation in sequencing counts of the studied conditions, as well as their comparison to the output features (e.g. identified peaks) from user selected data analysis methods.The RepViz tool is primarily designed for chromatin data such as ChIP-seq and ATAC-seq, but can also be used with other sequencing data such as RNA-seq, or combinations of different types of genomic data.
Author: Thomas Faux, Kalle Rytkönen, Asta Laiho, Laura L. Elo
Maintainer: Thomas Faux, Asta Laiho <faux.thomas1 at gmail.com> <asta.laiho at utu.fi>
Citation
From within R, enter citation("RepViz"):
Thomas Faux, Kalle Rytkönen, Asta Laiho, Laura L. Elo. RepViz: Replicate oriented Visualization of a genomic region. doi:10.18129/B9.bioc.RepViz, R package version 1.29.0, https://bioconductor.org/packages/RepViz.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("RepViz")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.29.0 |
| License | GPL-3 |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.9 (R-3.6) (7 years) |
| Downloads rank | 1801 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | ATACSeq, ChIPSeq, Coverage, GenomicVariation, Sequencing, Software, Visualization, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/RepViz/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RepViz")| RepViz-vignette | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RepViz_1.29.0.tar.gz |
| Windows binary (x86_64) | RepViz_1.29.0.zip |
| macOS binary (arm64) | RepViz_1.29.0.tgz |
| macOS binary (x86_64) | RepViz_1.29.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RepViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RepViz |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 3.5.1), GenomicRanges (>= 1.30.0), Rsamtools (>= 1.34.1), IRanges (>= 2.14.0), biomaRt (>= 2.36.0), S4Vectors (>= 0.18.0), graphics, grDevices, utils