Rarr
This is the development version of Rarr; for the stable release version, see Rarr.
A Simple and Performant Native R Reader & Writer for Zarr Arrays
Bioconductor version: Development (3.24)
The Zarr specification defines a format for chunked, compressed, N-dimensional arrays. Its design allows efficient access to subsets of the stored array, and supports both local and cloud storage systems. Rarr aims to implement this specification in R with minimal reliance on an external tools or libraries.
Author: Mike Smith [aut, ccp] (ORCID: 
, Maintainer from 2022 to 2025.), Hugo Gruson [aut, cre] , Artür Manukyan [ctb], Sharla Gelfand [ctb], German Network for Bioinformatics Infrastructure - de.NBI [fnd] (ROR: <https://ror.org/01vmpm840>)
Maintainer: Hugo Gruson <hugo.gruson at embl.de>
citation("Rarr")):Mike Smith, Hugo Gruson. Rarr: A Simple and Performant Native R Reader & Writer for Zarr Arrays. doi:10.18129/B9.bioc.Rarr, R package version 2.1.46, https://bioconductor.org/packages/Rarr.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("Rarr")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Rarr")| Design principles for the Rarr package | HTML | |
| "Supported Zarr features in Rarr" | HTML | R Script |
| "Working with Zarr arrays in R" | HTML | R Script |
| "Working with **remote** Zarr arrays in R" | HTML | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataImport, Software |
| Version | 2.1.46 |
| In Bioconductor since | BioC 3.17 (R-4.3) (3.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 4.2.0) |
| Imports | curl, grumpy, jsonlite, paws.storage, R.utils, rlang, utils |
| System Requirements | GNU make |
| URL | https://huber-group-embl.github.io/Rarr/ https://github.com/Huber-group-EMBL/Rarr |
| Bug Reports | https://github.com/Huber-group-EMBL/Rarr/issues |
See More
| Suggests | BiocStyle, knitr, progressr, rmarkdown, testthat (>= 3.0.0), withr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | ImageArray, spatialdataR, ZarrArray |
| Suggests Me | anndataR |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Rarr_2.1.46.tar.gz |
| Windows Binary (x86_64) | Rarr_2.1.46.zip |
| macOS Binary (big-sur-x86_64) | Rarr_2.1.46.tgz |
| macOS Binary (sonoma-arm64) | Rarr_2.1.46.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Rarr |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Rarr |
| Package Short Url | https://bioconductor.org/packages/Rarr/ |
| Package Downloads Report | Download Stats |