Welcome to the new bioconductor.org!

RTCA

This is the development version of RTCA; for the stable release version, see RTCA.

Open-source toolkit to analyse data from xCELLigence System (RTCA)


Bioconductor version: Development (3.19)

Import, analyze and visualize data from Roche(R) xCELLigence RTCA systems. The package imports real-time cell electrical impedance data into R. As an alternative to commercial software shipped along the system, the Bioconductor package RTCA provides several unique transformation (normalization) strategies and various visualization tools.

Author: Jitao David Zhang

Maintainer: Jitao David Zhang <davidvonpku at gmail.com>

Citation (from within R, enter citation("RTCA")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RTCA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RTCA")
Introduction to Data Analysis of the Roche xCELLigence System with RTCA Package PDF R Script
RTCAtransformation: Discussion of transformation methods of RTCA data PDF R Script
Reference Manual PDF

Details

biocViews CellBasedAssays, ImmunoOncology, Infrastructure, Software, TimeCourse, Visualization
Version 1.55.0
In Bioconductor since BioC 2.5 (R-2.10) (14.5 years)
License LGPL-3
Depends methods, stats, graphics, Biobase, RColorBrewer, gtools
Imports
System Requirements
URL http://code.google.com/p/xcelligence/ http://www.xcelligence.roche.com/ http://www.nextbiomotif.com/Home/scientific-programming
See More
Suggests xtable
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RTCA_1.55.0.tar.gz
Windows Binary RTCA_1.55.0.zip (64-bit only)
macOS Binary (x86_64) RTCA_1.55.0.tgz
macOS Binary (arm64) RTCA_1.55.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RTCA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RTCA
Bioc Package Browser https://code.bioconductor.org/browse/RTCA/
Package Short Url https://bioconductor.org/packages/RTCA/
Package Downloads Report Download Stats