RSVSim
This is the development version of RSVSim; for the stable release version, see RSVSim.
RSVSim: an R/Bioconductor package for the simulation of structural variations
Bioconductor version: Development (3.20)
RSVSim is a package for the simulation of deletions, insertions, inversion, tandem-duplications and translocations of various sizes in any genome available as FASTA-file or BSgenome data package. SV breakpoints can be placed uniformly accross the whole genome, with a bias towards repeat regions and regions of high homology (for hg19) or at user-supplied coordinates.
Author: Christoph Bartenhagen
Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>
citation("RSVSim")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("RSVSim")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RSVSim")| RSVSim: an R/Bioconductor package for the simulation of structural variations | R Script | |
| Reference Manual |
Details
| biocViews | Sequencing, Software |
| Version | 1.45.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11.5 years) |
| License | LGPL-3 |
| Depends | R (>= 3.5.0), Biostrings, GenomicRanges |
| Imports | methods, IRanges, ShortRead |
| System Requirements | |
| URL |
See More
| Suggests | BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked, MASS, rtracklayer, pwalign |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RSVSim_1.45.0.tar.gz |
| Windows Binary (x86_64) | RSVSim_1.45.0.zip (64-bit only) |
| macOS Binary (x86_64) | RSVSim_1.45.0.tgz |
| macOS Binary (arm64) | RSVSim_1.45.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RSVSim |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RSVSim |
| Bioc Package Browser | https://code.bioconductor.org/browse/RSVSim/ |
| Package Short Url | https://bioconductor.org/packages/RSVSim/ |
| Package Downloads Report | Download Stats |