RPA

DOI: 10.18129/B9.bioc.RPA  

This is the development version of RPA; for the stable release version, see RPA.

RPA: Robust Probabilistic Averaging for probe-level analysis

Bioconductor version: Development (3.19)

Probabilistic analysis of probe reliability and differential gene expression on short oligonucleotide arrays.

Author: Leo Lahti [aut, cre]

Maintainer: Leo Lahti <leo.lahti at iki.fi>

Installation

To install this package, start R (version "4.4") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RPA")

 

HTML		RPA R package
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	GeneExpression, Microarray, Preprocessing, QualityControl, Software
Version	1.59.0
In Bioconductor since	BioC 2.5 (R-2.10) (14 years)
License	BSD_2_clause + file LICENSE
Depends	R (>= 3.1.1), affy, BiocGenerics, BiocStyle, methods, rmarkdown
Imports	phyloseq
LinkingTo
Suggests	knitr, parallel
SystemRequirements
Enhances
URL	https://github.com/antagomir/RPA
BugReports	https://github.com/antagomir/RPA
Depends On Me	prebs
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	RPA_1.59.0.tar.gz
Windows Binary	RPA_1.59.0.zip
macOS Binary (x86_64)	RPA_1.59.0.tgz
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/RPA
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/RPA
Bioc Package Browser	https://code.bioconductor.org/browse/RPA/
Package Short Url	https://bioconductor.org/packages/RPA/
Package Downloads Report	Download Stats