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RNAmodR.RiboMethSeq

This is the development version of RNAmodR.RiboMethSeq; for the stable release version, see RNAmodR.RiboMethSeq.

Detection of 2'-O methylations by RiboMethSeq


Bioconductor version: Development (3.19)

RNAmodR.RiboMethSeq implements the detection of 2'-O methylations on RNA from experimental data generated with the RiboMethSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.

Author: Felix G.M. Ernst [aut, cre] , Denis L.J. Lafontaine [ctb, fnd]

Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>

Citation (from within R, enter citation("RNAmodR.RiboMethSeq")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RNAmodR.RiboMethSeq")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RNAmodR.RiboMethSeq")
RNAmodR.RiboMethSeq HTML R Script
Reference Manual PDF
NEWS Text

Details

biocViews Sequencing, Software, Visualization, WorkflowStep
Version 1.17.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 4.0), RNAmodR(>= 1.5.3)
Imports methods, S4Vectors, BiocGenerics, IRanges, GenomicRanges, Gviz
System Requirements
URL https://github.com/FelixErnst/RNAmodR.RiboMethSeq
Bug Reports https://github.com/FelixErnst/RNAmodR.RiboMethSeq/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat, rtracklayer, RNAmodR.Data
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package RNAmodR.RiboMethSeq_1.17.0.tar.gz
Windows Binary RNAmodR.RiboMethSeq_1.17.0.zip (64-bit only)
macOS Binary (x86_64) RNAmodR.RiboMethSeq_1.17.0.tgz
macOS Binary (arm64) RNAmodR.RiboMethSeq_1.17.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/RNAmodR.RiboMethSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RNAmodR.RiboMethSeq
Bioc Package Browser https://code.bioconductor.org/browse/RNAmodR.RiboMethSeq/
Package Short Url https://bioconductor.org/packages/RNAmodR.RiboMethSeq/
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