RNAmodR.AlkAnilineSeq
This is the development version of RNAmodR.AlkAnilineSeq; for the stable release version, see RNAmodR.AlkAnilineSeq.
All Bioconductor versions of RNAmodR.AlkAnilineSeq
3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10
Detection of m7G, m3C and D modification by AlkAnilineSeq
Bioconductor version: 3.24 · Package version: 1.27.0
RNAmodR.AlkAnilineSeq implements the detection of m7G, m3C and D modifications on RNA from experimental data generated with the AlkAnilineSeq protocol. The package builds on the core functionality of the RNAmodR package to detect specific patterns of the modifications in high throughput sequencing data.
Author: Felix G.M. Ernst [aut, cre] 
, Denis L.J. Lafontaine [ctb, fnd]
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
Citation
From within R, enter citation("RNAmodR.AlkAnilineSeq"):
Felix G.M. Ernst. RNAmodR.AlkAnilineSeq: Detection of m7G, m3C and D modification by AlkAnilineSeq. doi:10.18129/B9.bioc.RNAmodR.AlkAnilineSeq, R package version 1.27.0, https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("RNAmodR.AlkAnilineSeq")For older versions of R, please refer to the appropriate Bioconductor release.
Details
| Version | 1.27.0 |
| License | Artistic-2.0 |
| URL | https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq |
| Bug Reports | https://github.com/FelixErnst/RNAmodR.AlkAnilineSeq/issues |
| Last updated | 2026-04-28 |
| In Bioconductor since | BioC 3.10 (R-3.6) (6 years) |
| Downloads rank | 1248 of 2,456 |
| Source branch | devel |
| Build report | Bioconductor build system, r-universe |
| biocViews | Sequencing, Software, Visualization, WorkflowStep |
| Package Short Url | https://bioconductor.org/packages/RNAmodR.AlkAnilineSeq/ |
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAmodR.AlkAnilineSeq")| RNAmodR: AlkAnilineSeq | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Download
Follow the installation instructions to use this package in your R session.
| Source package | RNAmodR.AlkAnilineSeq_1.27.0.tar.gz |
| Windows binary (x86_64) | RNAmodR.AlkAnilineSeq_1.27.0.zip |
| macOS binary (arm64) | RNAmodR.AlkAnilineSeq_1.27.0.tgz |
| macOS binary (x86_64) | RNAmodR.AlkAnilineSeq_1.27.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAmodR.AlkAnilineSeq |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAmodR.AlkAnilineSeq |
| Package Downloads Report | Download Stats |
Dependencies
Depends: R (>= 4.0), RNAmodR (>= 1.5.3)
Imports: methods, S4Vectors, IRanges, BiocGenerics, GenomicRanges, Gviz
Suggests: BiocStyle, knitr, rmarkdown, testthat, rtracklayer, Biostrings, Seqinfo, RNAmodR.Data
Reverse dependencies
Suggests Me (1): RNAmodR.ML