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RDRToolbox

This is the development version of RDRToolbox; for the stable release version, see RDRToolbox.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7

A package for nonlinear dimension reduction with Isomap and LLE.

DOI: 10.18129/B9.bioc.RDRToolbox

Bioconductor version: Development (3.24)

A package for nonlinear dimension reduction using the Isomap and LLE algorithm. It also includes a routine for computing the Davis-Bouldin-Index for cluster validation, a plotting tool and a data generator for microarray gene expression data and for the Swiss Roll dataset.

Author: Christoph Bartenhagen

Maintainer: Christoph Bartenhagen <c.bartenhagen at uni-koeln.de>

Citation (from within R, enter citation("RDRToolbox")):

Christoph Bartenhagen. RDRToolbox: A package for nonlinear dimension reduction with Isomap and LLE. doi:10.18129/B9.bioc.RDRToolbox, R package version 1.63.0, https://bioconductor.org/packages/RDRToolbox.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("RDRToolbox")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RDRToolbox")

Details

Package Archives

Follow Installation instructions to use this package in your R session.