RCyjs

DOI: 10.18129/B9.bioc.RCyjs    

This is the development version of RCyjs; for the stable release version, see RCyjs.

Display and manipulate graphs in cytoscape.js

Bioconductor version: Development (3.12)

Interactive viewing and exploration of graphs, connecting R to Cytoscape.js, using websockets.

Author: Paul Shannon

Maintainer: Paul Shannon <paul.thurmond.shannon at gmail.com>

Citation (from within R, enter citation("RCyjs")):

Installation

To install this package, start R (version "4.0") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("RCyjs")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF   Reference Manual

Details

biocViews GraphAndNetwork, Software, ThirdPartyClient, Visualization
Version 2.11.0
In Bioconductor since BioC 3.1 (R-3.2) (5.5 years)
License MIT + file LICENSE
Depends R (>= 3.5.0), BrowserViz(>= 2.7.18), graph(>= 1.56.0)
Imports methods, httpuv (>= 1.5.0), BiocGenerics, base64enc, utils
LinkingTo
Suggests RUnit, BiocStyle, RefNet, knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS 10.13 (High Sierra)
Source Repository git clone https://git.bioconductor.org/packages/RCyjs
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/RCyjs
Package Short Url https://bioconductor.org/packages/RCyjs/
Package Downloads Report Download Stats

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