• Home
• Bioconductor 3.24
• Software Packages
• RBPSpecificity (development version)

RBPSpecificity

This is the development version of RBPSpecificity; to use it, please install the devel version of Bioconductor.

RBP Inherent Specificity and Variation Sensitivity Analysis Tool

DOI: 10.18129/B9.bioc.RBPSpecificity

Bioconductor version: Development (3.24)

Provides tools to analyze RNA Binding Protein (RBP) binding specificities from high-throughput sequencing data. Functions include calculating K-mer enrichment, Inherent Specificity (IS), and Mutational Sensitivity (VS), along with visualization of IS and VS. For detailed methodology and applications, please refer to our manuscript (see URL field or vignette).

Author: Soon Yi [aut, cre] ORCID: 0000-0002-4535-6532 , National Institutes of Health [fnd] (T32 GM152319)

Maintainer: Soon Yi <cu.soonyi at gmail.com>

Citation (from within R, enter citation("RBPSpecificity")):

Soon Yi. RBPSpecificity: RBP Inherent Specificity and Variation Sensitivity Analysis Tool. doi:10.18129/B9.bioc.RBPSpecificity, R package version 0.99.6, https://bioconductor.org/packages/RBPSpecificity.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("RBPSpecificity")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RBPSpecificity")

Details

Package Archives

Follow Installation instructions to use this package in your R session.